KEGGgraph: a graph approach to KEGG PATHWAY in R and bioconductor

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KEGGgraph: a graph approach to KEGG PATHWAY in R and bioconductor

MOTIVATION KEGG PATHWAY is a service of Kyoto Encyclopedia of Genes and Genomes (KEGG), constructing manually curated pathway maps that represent current knowledge on biological networks in graph models. While valuable graph tools have been implemented in R/Bioconductor, to our knowledge there is currently no software package to parse and analyze KEGG pathways with graph theory. RESULTS We in...

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KEGGgraph: Application Examples

In this vignette, we demonstrate the application of KEGGgraph as flexible module in analysis pipelines targeting heterogenous biological questions. For basic use of the KEGGgraph package, please refer to the vignette KEGGgraph: a graph approach to KEGG PATHWAY in R and Bioconductor.

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ژورنال

عنوان ژورنال: Bioinformatics

سال: 2009

ISSN: 1460-2059,1367-4803

DOI: 10.1093/bioinformatics/btp167